2010

​Özbayraktar Kavun, F. B., Ülgen, K., Drug target identification in sphingolipid metabolism by computational systems biology tools: Metabolic control analysis and metabolic pathway analysis, Journal of Biomedical Informatics​, 43​, 4​, 537-549​, 2010.

 

​Tozluoğlu M., Karaca E., Nussinov R., Haliloglu T. , A Mechanistic View of the Role of E3 in Sumoylation, PLoS Computational Biology​, 6​, 8​, 1-10​, 2010.

 

​Ozbek P., Soner S., Erman B., Haliloglu T., DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues, Nucleic Acids Research​, 38​​, W417-W423​, 2010.

 

​Schushan, M., Barkan Y., Haliloglu T., Ben-Tal N., Cα-trace model of the transmembrane domain of human copper transporter 1, motion and functional implications, Biophysical Journal​, 107​, 24​, 10908-10913​, 2010.

 

​Karakaya M, Avcı AK , Comparison of compact reformer configurations for on-board fuel processing, International Journal of Hydrogen Energy​, 35​​, 2305-2316​, 2010.

 

​Avcı AK, Trimm DL, Karakaya M , Microreactor catalytic combustion for chemicals processing, Catalysis Today​, 155​​, 66-74​, 2010.

 

​Uguz AK, Massoudi M, Heat transfer and Couette flow of a chemically-reacting non-linear fluid, Mathematical Methods in the Applied Sciences​, 33​, 11​, 1331-1341​, 2010.

 

​Uguz AK, Alvarez NJ, Narayanan R, An experimental study of the stability of liquid bridges subject to shear-induced closed-flow, Journal of Colloid and Interface Science​, 346​, 2​, 464-469​, 2010.

 

​Durmuş S, Umit P, Eren A, Ülgen KO, Reconstruction of Protein-Protein Interaction Network of Insulin Signaling in H. Sapiens , Journal of Biomedicine and Biotechnology​, 1​​​, 2010.

 

​Yeheskel A., Haliloglu T., Ben-Tal N., Independent and cooperative motions of the Kv1.2 channel: voltage sensing and gating, Biophysical Journal​, 98​, 10​, 2179-2188​, 2010.

 

​Okay N., Akman U., Analysis of ESCO Activities Using Country Indicators, Renewable & Sustainable Energy Reviews​, 14​, 9​, 2760-2771​, 2010.

 

​Ozer N., Schiffer C.A., Haliloglu T.,, Rationale for more diverse inhibitors in competition with substrates in HIV-1 protease, Biophysical Journal,​, 99​, 5​, 1650-1659​, 2010.

 

​Haliloglu T., Gul A., Erman B. , Predicting important residues and interaction pathways in proteins using Gaussian Network Model: binding and stability of HLA proteins, PLoS Computational Biology​, 6​, 7​, 1-11​, 2010.

 

​Wainreb G. et al., “MuD: An Interactive Web Server for the Prediction of Non-Neutral Substitutions Using Protein Structural Data, Nucleic Acids Research​, 38​, ​, W523-W528​, 2010.

 

​Özkara-Aydınoğlu, Ş, Aksoylu, A. E., Carbon dioxide reforming of methane over Co-X/ZrO2 catalysts (X=La, Ce, Mn, Mg, K), Catalysis Communications​, 11​​, 1165-1170​, 2010.

 

​Canelas A. B., Harrison N., Fazio A., Zhang J., Pitkänen J.P., van den Brink J., Bakker B.M., Bogner L., Bouwman J., Castrillo J.I., Cankorur A., Chumnanpuen P., Daran-Lapujade P., Dikicioglu D., van Eunen K., Ewald J.C., Heijnen J.J., Kirdar B., Mattila I., Mensonides F.I.C., Niebel A., Penttilä M., Pronk J.T., Reuss M., Salusjärvi L., Sauer U., Sherman D., Siemann-Herzberg M., Westerhoff H., de Winde J., Petranovic D., Oliver S.G., Workman C.T., Zamboni, Nielsen J.,, Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains, Nature Communications​, 1:145​​​, 2010.

 

​Günay EM, Yıldırım R, , Analysis of selective CO oxidation over promoted Pt/Al2O3 catalysts using modular neural networks: Combining preparation and operational variables, Appl. Catal. A​, 377​​, 174-180​, 2010.

 

​Candan-Davran T, Günay EM, Yıldırım R , Structure and activity relationship for CO and O2 adsorption over gold nanoparticles using DFT and artificial neural networks, J. Chem. Phys.​, 132​​, 174113​, 2010.

 

​Gunes H, Yildirim, R , Low temperature water-gas shift reaction on Au-CeO2/Al2O3 catalysts, Int. J. Chem. React. Eng.​, 8​​, A157​, 2010.



2009

​Özkara-Aydınoğlu, Ş., Özensoy, E., Aksoylu, A. E., The effect of impregnation strategy on methane dry reforming activity of Ce promoted Pt/ZrO2, International Journal of Hydrogen Energy​, 34​​, 9711-9722​, 2009.

 

Sümer, A., Aksoylu, A. E., Adsorption Induced Surface Electronic Reconstruction of Pt and Pt-Sn Alloys during CO Adsorption, Journal of Physical Chemistry C​, 113​​, 14329-14334​, 2009.

 

​​Ulutas B., Haliloglu T., Bozma I., , “Folding pathways explored with artificial potential functions”, Physical Biology​, 6​, 3​, Article No036008(1-14)​, 2009.

 

​Ozen A., Gonen M., Alpaydin E. and Haliloglu T., “Machine learning integration for predicting the effect of single amino acid substitutions on protein stability”, BMC Structural Biology​, 9​​, Article No66(1-17)​, 2009.

 

Gülyüz, B., Aksoylu, A. E., Önsan, Z. İ., "Kinetics of CO Oxidation over Pt-CeOx Supported on Air-oxidized Activated Carbon", Turkish Journal of Chemistry, in press.

 

​Selen Çağlayan, B., Aksoylu, A. E., Water-Gas Shift Reaction Over Bimetallic Pt-Ni/Al2O3 Catalysts, Turkish Journal of Chemistry​, 33​​, 249-256​, 2009.

 

​​Haliloglu T., Erman B., “Analysis of Correlations between Energy and Residue Fluctuations in Native Proteins and Determination of Specific Sites for Binding”, Physical Review Letters​, 102​, 8​, Article No088103(1-17)​, 2009.

 

​Kavun, F. B., Ülgen, K., , Molecular facets of sphingolipids: Potential drug targets, Biotechnology Journal​, 4​, 7​, 1028-1041​, 2009.

 

​Saliha D. Tekir, K. Yalçın Arga, Kutlu Ö. Ülgen , Drug targets for tumorigenesis: Insights from structural analysis of EGFR signaling network, Journal of Biomedical Informatics​, 42​, 2​, 228-236​, 2009.

 

​Karakaya M, Avcı AK , Simulation of on-board fuel conversion in catalytic microchannel reactor-heat exchanger systems, Topics in Catalysis​, 52​​, 2112-2116​, 2009.

 

Aktaş, S., Karakaya, M., Avcı, A.K., “Thermodynamic analysis of steam assisted conversions of bio-oil components to synthesis gas”, International Journal of Hydrogen Energy, basım aşamasında (2009). (DOI: 10.1016/j.ijhydene.2008.12.019)

 

Karakaya, M., Avcı, A.K., Aksoylu, A.E., Önsan, Z.İ., “Steady state and dynamic modeling of indirect partial oxidation of methane in a wall-coated microchannel”, Catalysis Today, 139 (2009) 312-321.

 

​​Kurkcuoglu O.; Kurkcuoglu Z.; Doruker P. et al. , Collective dynamics of the ribosomal tunnel revealed by elastic network modeling, Proteins-Structure Function and Bioinformatics​, 75​​, 837-845 ​, 2009.

 

​Akten E. D., Cansu S., Doruker P., A Docking Study Using Atomistic Conformers Generated via Elastic Network Model for Cyclosporin A/Cyclophilin A Complex, Journal of Biomolecular Structure&Dynamics​, 27​​, 13-25​, 2009.

 

​Kurkcuoglu O., Turgut O.T., Cansu S. et al., Focused Functional Dynamics of Supramolecules by Use of a Mixed-Resolution Elastic Network Model, Biophysical Journal​, 97​​, 1178-1187 ​, 2009.

 

Davran-Candan, T., Aksoylu, A. E., Yıldırım, R., “Reaction Pathway Analysis for CO Oxidation over Anionic Gold Hexamers using DFT”, J. Mol.Catal​, 306​​, 118-122​, 2009.

 

​​Uğuz K E, Yıldırım R , Comparative Study of Selective CO Oxidation over Pt-Co-M/Al2O3 Catalysts (M=Ce, Mg, Mn, Zr, Fe) in Hydrogen-rich Streams: Effects of Second Promoter, Turkish J. Chem. ​, 33​​, 545-553​, 2009.

 

​Huang, H; Ozkirimli, E; Post, CB, Comparison of Three Perturbation Molecular Dynamics Methods for Modeling Conformational Transitions, JOURNAL OF CHEMICAL THEORY AND COMPUTATION​, 5​, 5​, 1304-1314​, 2009.



2008

Günay. E.,Yıldırım, R.” Neural network aided design of Pt-Co-Ce/Al2O3 catalyst for selective CO oxidation in hydrogen-rich streams”, Chem Eng. J 140 (2008) 324-331

 

Günay Erdem, Nikerel, İ.E., Toksoy, E., Kırdar, B., Yıldırım, R., “Simultaneous modeling of enzyme production and biomass growth in recombinant Escherichia coli using artificial neural networks”, Biochem. Eng. J. 42 (2008)329-335

 

A. Kerem Uguz and N. Aubry, 2008, “Quantifying the linear stability of a flowing electrified two-fluid layer in a channel for fast electric times”, Physics of Fluids, 20, 092103.

 

A. Kerem Uguz, O. Ozen, and N. Aubry, 2008, “Electric field effect on a two-fluid interface instability in channel flow for fast electric times”, Physics of Fluids, 20, 031702.

 

Ozkirimli E, Yadav SS, Miller WT, et al., An electrostatic network and long-range regulation of Src kinases, PROTEIN SCIENCE Volume: 17 Issue: 11 Pages: 1871-1880 Published: NOV 2008

 

Herrgård, M. J., Swainston, N., Dobson, P., Dunn, W. B., Arga, K. Y., Arvas, M., Blüthgen, N., Borger, S., Costenoble, R., Heinemann, M., Hucka, M., Le Novère, N., Li, P., Liebermeister, W., Mo, M. L., Oliveira, A. P., Petranovic, D., Pettifer, S., Simeonidis, E., Smallbone, K., Spasi, I., Weichart, D., Brent, R., Broomhead, D. S., Westerhoff, H. V., Kırdar, B., Penttilä, M., Klipp, E., Palsson, B. Ø., Sauer, U., Oliver, S. G., Mendes, P., Nielsen, J. & Kell, D. B.; A consensus yeast metabolic network obtained from a community approach to systems biology, Nature Biotechnol. 26, 1155-1160, 2008

 

Dikicioğlu D, Pınar Pir, Z. İlsen Onsan, Kutlu O. Ulgen, Betul Kirdar, Stephen G. Oliver; Integration of metabolic modeling and phenotypic data in evaluation and improvement of ethanol production using respiration defiant mutants of S. Cerevisiae, Applied and Environmental Microbiology 74 (18), 5809-5816, 2008

 

Pir P, Betul Kirdar, Andrew Hayes, Z. İlsen Onsan, Kutlu O. Ulgen, Stephen G. Oliver; Exometabolic and transcriptional response in relation to phenotype and gene copy number in respiration-related deletion mutants of S. Cerevisiae, Yeast, 25:661-672, 2008


İnoğlu, N., Kayrak-Talay, D., Hortaçsu, Ö. “Glucose Oxidase Immobilization by Polyurethane Film/Foam in Dense CO2 Environment”, Process Biochemistry, 43, 271-279 (2008)
Tozluoglu M., Karaca E., Haliloglu T., et al., “Cataloging and organizing p73 interactions in cell cycle arrest and apoptosis”, Nucleic Acids Research, 36, 5033-5049, 2008.

 

Haliloglu T., Ben-Tal N., “Cooperative Transition between Open and Closed Conformations in Potassium Channels”, PLOS Computational Bilogy, 4, 1-11, 2008.

 

Haliloglu T., Seyrek E., Erman B., “Prediction of binding sites in receptor-ligand complexes with the Gaussian Network Model”, Physical Review Letters, 100, 228102, 2008.

 

S. Ucyigitler, M. C. Camurdan, M. Turkay, R. J. Elliott, “Inferring Transferable Intermolecular Potential Models”, Molecular Simulation, Vol 34, No 2, pp147-154, 2008

 

Tan, Ö., Maşalacı, E., Önsan, Z.İ., Avcı, A.K., “Design of a methane processing system producing high-purity hydrogen”, International Journal of Hydrogen Energy, 33 (2008) 5516-5526.

 

Kurkcuoglu O.; Doruker P.; Sen.T.Z; Kloczkowski A.; Jernigan R.L. "The ribosome structure controls and directs mRNA entry, translocation and exit dynamics", Physical Biology, 5, Article Number 046005 (2008)

 

Kantarci-Carsibasi N.; Haliloglu T.; Doruker P. "Conformational Transition Pathways Explored by Monte Carlo Simulation Integrated with Collective Modes", Biophysical Journal, 95, 5862-5873 (2008)

 

Cansu S.; Doruker P. "Dimerization affects collective dynamics of triosephosphate isomerase", Biochemistry, 47, 1358-1368 (2008)

 

Soyal-Baltacıoğlu, F., Aksoylu, A. E., Önsan, Z. İ., “Steam Reforming of Ethanol over Pt-Ni Catalysts”, Catalysis Today, 138 (2008) 183-186.

 

Gökaliler, F., Göçmen, B. A., Aksoylu, A.E., “The Effect of Ni:Pt Ratio on Autothermal Reforming Performance of Pt-Ni/Al2O3 Catalyst”, International Journal of Hydrogen Energy, 33 (2008) 4358-4366.

 

Sümer, A., Aksoylu, A. E., “CO and O coadsorption on Pt3Sn Studied by DFT: Changes in The Adsorptive Properties of The Surface with Alloying and Coverage”, Surface Science, 602 (2008) 1636-1642.

 

Gökaliler, F., Selen Çağlayan, B., Önsan, Z. İ., Aksoylu, A. E., “Hydrogen Production by Autothermal Reforming of LPG for PEM Fuel Cell Applications”, International Journal of Hydrogen Energy, 33(4) (2008) 1383-1391.

 

Örücü, E., Gökaliler, F., Aksoylu, A. E., Önsan, Z. İ., “Ethanol Steam Reforming for Hydrogen Production over Bimetallic Pt-Ni/Al2O3”, Catalysis Letters, 120 (2008) 198-203.

 

Keskin S., Akman U., Hortaçsu Ö., “Soil Remediation via an Ionic Liquid and Supercritical CO2”, Chemical Engineering and Processing, 47(9-10), 1693-1704 (2008)

 

Okay E., Okay N., Konukman A.E.S., Akman U., “Views on Turkey's Impending ESCO Market: Is it Promising?”, Energy Policy, 36(6), 1821-1825 (2008)

 

Akman U., Okay N. Hortacsu O, “Hierarchical Clustering Analysis for the Distribution of Origanum-Oil Components in Dense CO2”, Korean Journal of Chemical Engineering, 25(2), 329-344 (2008)

 

Kayrak-Talay D., Akman U., Hortacsu Ö., “Supercritical Carbon Dioxide Immobilization of Glucose Oxidase on Polyurethane / Polypyrrole Composite”, Journal of Supercritical Fluids, 44(3), 457-465 (2008)

 

S. Durmuş, K.Y.Arga, K. Ülgen (2008) Drug targets for tumorigenesis: Insights from structural analysis of EGFR signaling network, Journal of Biomedical Informatics, 30, 327-338.

 

Mehmet M. Altintas, Kutlu O. Ulgen, Darryl Palmer-Toy, Vivian E. Shih, Dhinakar S. Kompala, Jochen Reiser (2008) Emerging Roles for Metabolic Engineering - Understanding Primitive and Complex Metabolic Models and Their Relevance to Healthy and Diseased Kidney Podocytes, Current Chemical Biology, 2(1): 68-82.



2007

Oh H, Ozkirimli E, Shah K, et al., Generation of an analog-sensitive syk tyrosine kinase for the study of signaling dynamics from the B cell antigen receptor, JOURNAL OF BIOLOGICAL CHEMISTRY Volume: 282 Issue: 46 Pages: 33760-33768 Published: NOV 16 2007

 

Tunahan Cakir, Selma Alsan, Hale Saybasili, Ata Akin and Kutlu O Ulgen (2007) Reconstruction and flux analysis of coupling between metabolic pathways of astrocytes and neurons: application to cerebral hypoxia, Theoretical Biology and Medical Modelling, 4:48.

 

Çakir T., Kirdar B., Onsan Zİ., Ulgen OK., Nielsen J.;Effect of carbon source perturbations on regulation of metabolic fluxes in S. Cerevisiae, BMC Systems Biology, 1:18, 2007

 

Çakir T., Efe Ç., Dikicioğlu D., Hortaçsu A., B. Kirdar, Oliver GO.: Flux balance analysis of a genome scale yeast model constrained by exometabolomic data allows metabolic system identification and strain genotype prediction, Biotechnology Progress 23,320-326, 20

 

Arga K Y, Z. İlsen Onsan, Betul Kırdar, Kutlu O. Ulgen, Jens Nielsen, Understanding signalling in yeast : Insights from network analysis, Biotechnology and Bioengineering ; 97(5),1246-1258, 2007

 

Misirli Z.,Toksoy Öner, E.,B. Kirdar; Real imaging and size values of Saccoromyces cerevisiae cells with comparable contrast tuning to two ESEM-modes, Scanning 29, 11-19,2007

 

Taymaz H., Eraslan E.,Toksoy Öner, E., Alkan T., Agırbaslı M., B. Kirdar, Sequence variations within the genes related to hemostatic imbalance and their impact on coronary artery disease in Turkish population, Thrombosis Research 119,55-62, 2007

 

Emekli U., Scheidman-Duhovny D., Wolfson H.J., Nussinov R., Haliloglu T., “HingeProt: Automated Prediction of Hinges in Protein Structures”, Proteins: Structure, Function, and Bioinformatics, 70, 1219-1227, 2007.

 

Shental-Bechor D., Haliloglu T., Ben-Tal N., “Interactions of cationic-hydrophobic peptides with lipid bilayers: A Monte Carlo simulation method”, Biophysical Journal, 93, 1858-1871, 2007.

 

Ozen A.S.; Doruker P.; Aviyente V. "Effect of cooperative hydrogen bonding in azo-hydrazone tautomerism of azo dyes", Journal of Physical Chemistry A, 111, 13506-13514 (2007)

 

B. Alakent, M. C. Camurdan, P. Doruker, Mimicking Protein Dynamics by the Integration of Elastic Network Model with Time Series Analysis II. International Journal High Performance Computing Applications, Vol 21 pp59-65, 2007

 

Keskin S., Kayrak-Talay D., Akman U., Hortaçsu Ö., “A Review of Ionic Liquids Towards Supercritical Fluid Applications”, Journal of Supercritical Fluids, 43(1),
150-180 (2007)

 

Kayrak-Talay D., U. Akman, O. Hortacsu, “Glucose Oxidase Immobilization on Conducting Polymers in Supercritical CO2 Environment: An Exploratory Study”,
Journal of Supercritical Fluids, 42(2), 273-281 (2007)

 

Soyal-Baltacıoğlu, F., Gülyüz, B., Aksoylu, A. E., Önsan, Z. İ., “Low-temperature CO Oxidation Kinetics over Activated Carbon Supported Pt-SnOx Catalysts”, Turkish Journal of Chemistry, 31 (2007) 455-464.

 

Şimşek, E., Özkara, Ş., Aksoylu, A. E., Önsan, Z. İ., “Preferential CO Oxidation over Activated Carbon Supported Catalysts in H2-Rich Gas Streams Containing CO2 and H2O”, Applied Catalysis A: General, 316 (2007) 169-174.

 

Z. İ. Önsan, “Catalytic processes for clean hydrogen production from hydrocarbons” Turkish Journal of Chemistry, 31 (2007) 531-550. (SCI)

 

Yasin Ersoz ,Ramazan Yildirim,A. Nilgün Akin “Development of An Active Platine Based Catalayst for the Reaction of H2 Production from NaBH4, Chem.Eng.J. 134(2007) 282-287

 

Özyönüm G.N, Akın .A.N Yıldırım, R. “Kinetic Study of Selective CO Oxidation over Pt-Co-Ce/Al2O3 Catalyst in Hydrogen-Rich Streams” Turkish J. Chem, 31 (2007) 445-553




2006

Ozkirimli E, Post CB, Src kinase activation: A switched electrostatic network, PROTEIN SCIENCE Volume: 15 Issue: 5 Pages: 1051-1062 Published: MAY 2006

 

G. Uysal, A. N. Akın, Z. İ. Önsan, R. Yıldırım, “Preferential CO oxidation over Pt-SnO2/Al2O3 in hydrogen-rich streams containing CO2 and H2O (CO removal from H2 with PROX)” Catalysis Letters, 111 (3-4) (2006) 173-176. (SCI)

 

G. Uysal, A. N. Akın, Z. İ. Önsan, R. Yıldırım, “Design of a Pt-Co-Ce/MgO catalyst for preferential CO oxidation” Catalysis Letters, 108(3-4) (2006) 193-196. (SCI)

 

Nikerel, İ.E., Toksoy Öner, E., Yıldırım, R.,B. Kirdar, ; Optimization of Medium Composition for Biomass Production of Recombinant Escherichia coli Cells Using Response Surface Methodology, Biochemical Engineering Journal 32, 1-6, 2006

 

Çakır T, Kiran Raosaheb Patil, Z. İlsen Onsan, Kutlu O. Ulgen, Betul Kirdar, Jens Nielsen ; Integration of mtabolome data with metabolic networks reveals reporter reactions, Molecular Systems Biology, 2006, doi:10.1038/msb4100085

 

Pir P, Kutlu O. Ulgen, Andrew Hayes, Z. İlsen Onsan, Betul Kirdar, Stephen G. Oliver; Annotation of Unknown Yeast ORFs by Correlation Analysis of Microarray Data and Extensive Literature Searches, Yeast, (2006) 23:553-571

 

Pir P, Kutlu O. Ulgen, Andrew Hayes, Z. Ilsen Onsan, Betul Kirdar, Stephen G. Oliver, Integrative Investigation of Metabolic and Transcriptomic Data, BMC Bioinformatics, (2006) 7:203 doi: 10.1186/1471-2105-7-203

 

S. Durmuş, T. Çakır, K. Ülgen (2006) Analysis of enzymopathies in the human red blood cells by constraint based stoichiometric modeling approaches, Computational Biology and Chemistry, 30, 327-338.

Akarsubaşı T.A., İnce O.,Oz N.A., Kırdar B.,İnce B.; Evaluation of performance, acetoclastic methanogenic activity and archeal composition of full scale UASB reactors treating alcohol distillery wastewaters, Process Biochemistry 41,28-35, 2006.
Ertekin A., Nussinov R., Haliloglu T., “Association of Putative Protein Binding Sites with the Fluctuation Behavior of Residues”, Protein Science, 15, 2265-2277, (2006).
Ozer N., Haliloglu T., Schiffer C.A., “Substrate Specificity in HIV-1 Protease by a Biased Sequence Search Method”, Proteins-Structure Function And Bioinformatics, 64, 444-456, (2006).
Konuklar FAS, Aviyente V, Haliloglu T, “Coupling of Structural Fluctuations to Deamidation Reaction in Triosephosphate Isomerase by Gaussian Network Model, Proteins, 62, 715-727 (2006).

 

Kucukpinar E.; Doruker P. “Molecular Simulations of Gas Transport in Nitrile Rubber and Styrene Butadiene Rubber”, Polymer, 47, 7835-7845, (2006)

Doruker P.; Nilsson L.; Kurkcuoglu O “Collective Dynamics of EcoRI-DNA Complex by Elastic Network Model and Molecular Dynamics Simulations”, Journal of Biomolecular Structure & Dynamics, 24, 1-15, (2006)

 

Kantarci N.; Doruker P.; Haliloglu T. “Cooperative Fluctuations Point to the Dimerization Interface of p53 Core Domain”, Biophysical Journal, 91, 421-432, (2006)

 

Kurkcuoglu O.; Jernigan R.L.; Doruker P. “Loop motions of triosephosphate isomerase observed with elastic networks”, Biochemistry, 45, 1173-1182, (2006)

 

Aydoğan S., S. Küsefoğlu, U. Akman, Ö. Hortaçsu, "Double-Bond Depletion of Soybean Oil Triglycerides with KMnO4 / H2O in Dense Carbon Dioxide", Korean
Journal of Chemical Engineering, 23(5), 704-713 (2006)

 

Sarıyar B., S. Perk., U. Akman, A. Hortacsu, "Monte Carlo Sampling and Principal Component Analysis of Flux Distributions Yield Topological and Modular
Information on Metabolic Networks", Journal of Theoretical Biology, 242(2), 389-400 (2006)

 

Üzer S., U. Akman, Ö. Hortaçsu, "Polymer Swelling and Impregnation Using Supercritical CO2: A Model-Component Study Towards Producing Controlled-
Release Drugs", Journal of Supercritical Fluids, 38(1), 119-128 (2006)

 

Saygı Ö., S. Küsefoğlu, U. Akman, Ö. Hortaçsu, "Polymerizable Oil Synthesis by Hydroxyhalogenation of Soybean Oil in Dense CO2", Journal of Supercritical
Fluids, 38(1), 119-128 (2006)

 

Gülmen, M. A., Sümer, A., Aksoylu, A. E., “Adsorption Properties of CO on Low-Index Pt3Sn Surfaces”, Surface Science, 600 (2006) 4909-4921.

 

Sümer, A., Gülmen, M. A., Aksoylu, A. E., “A Theoretical Investigation on Pt3Sn (102) Surface Alloy and CO-Pt3Sn(102) System”, Surface Science, 600 (2006) 2026-2039.