| Option 1 | Biomolecular Engineering |
| BIO 351 | Microbiology |
| ChE 353 | Chemical Processes |
| CHEM 415 | General Biochemistry |
| ChE 421 | Genetic Engineering Applications in Biotechnology |
| ChE 422 | Molecular Biotechnology |
| ChE 425 | Technology of Food Preservation |
| ChE 427 | Bioreaction Engineering |
| ChE 463 | Bioprocess Design |
| ChE 486 | Spec. Top. in ChE: Protein Interactions: From Molecules to Networks |
| ChE 520 | Downstream Processing in Biochemical Engineering |
| ChE 529 | Metabolic Engineering | Option 2 | Catalyst Technology and Reaction Engineering |
| ChE 353 | Chemical Processes |
| ChE 427 | Bioreaction Engineering |
| ChE 440 | Heterogenous Catalysis |
| ChE 441 | Hydrogen Technologies |
| ChE 442 | Design of Solid Catalysts |
| ChE 444 | Fuel Cells and Catalysis |
| ChE 487 | Spec. Top. in ChE:Sustainable Energy Technologies |
| ChE 541 | Microreaction Engineering |
| ChE 542 | Analysis of Sustainable Technologies |
| ChE 543 | Catalysis for Green Technologies |
| ChE 689 | Spec. Top. in ChE:Kinetic Stud.in Heterogeneous Cat. | Option 3 | Polymer/Biopolymer Science and Engineering |
| ChE 310 | Introduction to Macromolecular Systems |
| ChE 353 | Chemical Processes |
| ChE 412 | Structure, Function and Simulation of Biopolymers |
| ChE 413 | Design and Simulation of Macromolecular Systems |
| ChE 414 | Physical Properties of Polymeric Systems |
| Chem 435 | Introduction to Polymer Science and Technology |
| Chem 487 | Polymer Laboratory Experiments |
| ChE 510 | Molecular Thermodynamics in Polymeric and Biolgical Systems |
| ChE 511 | Polymer Processing Principles and Modeling |
| ChE 512 | Hierarchical Modeling of Macromolecular Systems |
| ChE 516 | Computational Biology and Bioinformatics |
| ChE 531 | Mechanical Properties of Polymers |
| ChE 538 | Polymer Applications |
| CmpE 544 | Pattern Recognition |
| ChE 688 | Spec. Top. in ChE:Folding, Binding & Allostery in Biomolecular Machines | Option 4 | Process Engineering |
| ChE 353 | Chemical Processes |
| ChE 426 | Food Engineering |
| ChE 430 | Separation Processes |
| ChE 450 | Energy Technologies |
| ChE 460 | Total Quality Engineering in Chemical Industries |
| ChE 465 | Operational and Enviromental Safety of Chemical Plants |
| ChE 476 | Computer Aided Design and Synthesis |
| ChE 477 | Process Optimization |
| ChE 478 | Cost and Risk Engineering |
| ChE 484 | Spec. Top. in ChE:Spectral Methods with Applications to Transport Processes |
| ChE 550 | Statistical Methods in Chemical Processes |
| ChE 555 | Applied Mathematics and Modeling for Chemical Egineers |
| ChE 566 | Process Engineering Strategy |
| ChE 577 | Design and Operation under Uncertainty and Risk |
| ChE 578 | Dynamic Optimization of Chemical Processes |